| Discovering a Regulatory Network Topology Using Ensemble Methods on GPGPUs with Special Reference to | Ahmad Al-Omari, James Griffith, Michael Judge,Thiab Taha, Jonathan Arnold , and H.Bernd Schuttler | IEEE Access | Volume 3 & Pages: 27 - 42 | IEEE | 2015 |
| Solving large Nonlinear Systems of First-order Ordinary Differential Equations with Hierarchical Str | Ahmad Al-Omari,J. Arnold ,T. Taha, and H.-B. Schuttler | IEEE Access | Volume 1 & Pages: 770 - 777 | IEEE | 2013 |
| Solving Nonlinear Systems of First Order Differential Equations Using a Galerkin Finite Element Meth | Ahmad Al-Omari, H.-B. Schuttler, J. Arnold and T. Taha | IEEE Access | Volume 1 & Pages: 408 - 417 | IEEE | 2013 |
| Synchronizing stochastic circadian oscillators in single cells of Neurospora crassa | Zhaojie Deng, Sam Arsenault, Cristian Caranica, James Griffith, Taotao Zhu, Ahmad Al-Omari, H-Bernd | Nature Scientific Reports | 6,1-18 | Nature | 2016 |
| Ensemble methods for stochastic networks with special reference to the biological clock of Neurospora crassa | C. Caranica, A. Al-Omari, Z. Deng, J. Griffith, R. Nilsen, L. Mao, J. Arnold, H.- B. Schuttler | PLOS ONE | 13 | PLOS | 2018/5 |
| Discovering regulators in Post-Transcriptional control of the Biological Clock of Neurospora crassa using Variable Topology Ensemble Methods on GPUs | Ahmad Al-Omari1, James Griffith2,3, Cristian Caranica4, Thiab Taha5. H-Bernd Schuttler6, & Jonathan Arnold3 | IEEE Access | 6 | IEEE | 2018 |
| Finding Regulatory Motifs of Genetic Networks Using Cut-Sort Algorithm | Ahmad AL-omari, Mohammed Tawalbeh,and Abedalmuhdi Almomany | Jordan Journal of Electrical Engineering | 5 | JJEE | 2019 |
| ٍSingle cells of Neurospora crassa show circadian oscillations, light entrainment, temperature compensation, and phase synchronization | Zhaojie Deng, Jia Hwei Cheong, Cristian Caranica, Lingyun Wu, Xiao Qiu, Michael Judge, Brooke Hull, Carmen Rodriguez, James Griffith, Ahmad Al-Omari, Sam Arsenault, Heinz-Bernd Schüttler, Leidong Mao, and Jonathan Arnold | IEEE Access | 7 | IEEE | 2019 |
| Discovering regulatory motifs of genetic networks using the indexing tree based algorithm: a parallel implementation | Abedalmuhdi Almomany, Ahmad M. Al-Omari, Amin Jarrah, Mohammad Tawalbeh | Engineering Computations | 38 | Emerald | 2020-06-26 00:00:00 |
| An OpenCL-Based Parallel Acceleration of a Sobel Edge Detection Algorithm Using Intel FPGA Technology | Abedalmuhdi Almomany, Ahmad M. Al-Omari, Amin Jarrah0, Mohammed Tawalbeh and Amin Alqudah | SAICSI | 32 | South African Computer Journal | 2020-07-20 |
| Identifying a stochastic clock network with light entrainment for single cells of Neurospora crassa | Cristian Caranica, Ahmad Al-Omari, H-Bernd Schuttler, & Jonathan Arnold | Nature Scientific Report | 10 | Nature | 25/08/2020 |
| Identifying a stochastic clock network with light entrainment for single cells of Neurospora crassa | Cristian Caranica, Ahmad Al-Omari, H-Bernd Schuttler, & Jonathan Arnold | Nature Scientific Report | 10 | Nature | 25/08/2020 |
| Ensemble Methods for Identifying RNA Operons and Regulons in the Clock Network of Neurospora crassa | AHMAD M. AL-OMARI1, JAMES GRIFFITH2,3, ASHLEY SCRUSE4, ROBERT W. ROBINSON5, HEINZ-BERND SCHÜTTLER6 AND JONATHAN ARNOLD3 | IEEE Access | 10 | IEEE | 16/3/2022 |
| The macroscopic limit to synchronization of cellular clocks in single cells of Neurospora crassa | Jia Hwei Cheong, Xiao Qiu, Yang Liu, Ahmad Al‑Omari, James Griffith, Heinz‑Bernd Schüttler, Leidong Mao & Jonathan Arnold | Scientific Report | 12 | Nature | 25/4/2022 |
| Big Data Bot with a Special Reference to Bioinformatics | Ahmad M. Al-Omari, Shefa M. Tawalbeh, Yazan H. Akkam, Mohammad Al-Tawalbeh, Shima’a Younis, Abdullah A. Mustafa and Jonathan Arnold | CMC-Computers, Materials & Continua | 75 | Tech Science Press | 2023 |
| On the Need for Healthcare Informatics Training among Medical Doctors in Jordan: A Pilot Study | Shefa M. Tawalbeh, Ahmed Al-Omari , Lina M. K. Al-Ebbini and Hiam Alquran | Informatics | 10 | Multidisciplinary Digital Publishing Institute | 2023 |
| Development of a novel light-sensitive PPG model using PPG scalograms and PPG-NET learning for non-invasive hypertension monitoring | Amjed Al Fahoum , Ahmad Al Omari , Ghadeer Al Omari , Ala’a Zyout | Heliyon | 10 | Elsevier-Cell Press | 23/10/2024 |
| Accelerating antimicrobial peptide design: Leveraging deep learning for rapid discovery | Ahmad M. Al-Omari ,Yazan H. Akkam,Ala’a Zyout,Shayma’a Younis,Shefa M. Tawalbeh,Khaled Al-Sawalmeh,Amjed Al Fahoum ,Jonathan Arnold | PLOS ONE | 19 | PLOS ONE | 20/12/2024 |
| Ensemble Methods for Identifying RNA Operons and Regulons in the Clock Network of Neurospora crassa | ---- | ---- | 10 | IEEE access | 2022-03-17 00:00:00 |
| The macroscopic limit to synchronization of cellular clocks in single cells of Neurospora crassa | ---- | ---- | 12 | Scientific Reports | 2022-04-25 00:00:00 |
| Big Data Bot with a Special Reference to Bioinformatics | ---- | ---- | 75 | Computers, Materials and Continua | 2023-03-31 00:00:00 |
| Accelerating antimicrobial peptide design: Leveraging deep learning for rapid discovery | ---- | ---- | 19 | PLOS ONE | 2024-12-20 00:00:00 |
| Origin of the clock in Neurospora crassa | ---- | ---- | 12 | Frontiers in Molecular Biosciences | 2026-01-14 00:00:00 |
| Origin of the clock in Neurospora crassa | Ahmad Al-Omari1, Cara Altimus2, Jonathan Arnold3*, Sam Arsenault4, Suchendra Bhandarkar5, Shishir Bhusal6, Christian Caranica7, Jia Hwei Cheong3, Zhaojie Deng8, Arthur S. Edison3, Garrett Floyd6, James Griffith3, Brooke Hull9, Michael T. Judge10†, Yang Liu11, Leidong Mao11, Bijoy Mohanty3, Xiao Qiu12, H.-B. Schüttler6, Ashley Scruse13, Thiab Taha5, Lingyun Wu6 and Yue Wu14 | Frontiers in Molecular Biosciences | 12 | Frontiers | 14/1/2026 |